If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ), 'gf_id' => 'HOM05D000924', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000924' ), 'data_identifier' => 'HOM05D000924', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000924', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '651', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p10320' => 'bna', 'A02p22840' => 'bna', 'A02p35620' => 'bna', 'A02p41450' => 'bna', 'A06p16950' => 'bna', 'A06p16960' => 'bna', 'A07p15350' => 'bna', 'A07p15360' => 'bna', 'A08p15930' => 'bna', 'Aa31LG11G2210' => 'aar', 'Aa31LG2G4950' => 'aar', 'Aa31LG6G12910' => 'aar', 'Aa31LG7G5140' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.4433' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4595' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_228.4663' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.783' => 'aag', 'Actinidia09601' => 'ach', 'Actinidia09602' => 'ach', 'Actinidia09603' => 'ach', 'Actinidia09604' => 'ach', 'Actinidia09605' => 'ach', 'Actinidia09606' => 'ach', 'Actinidia13525' => 'ach', 'Actinidia15549' => 'ach', 'Actinidia16119' => 'ach', 'Actinidia16120' => 'ach', 'Actinidia17090' => 'ach', 'Actinidia18715' => 'ach', 'Actinidia18717' => 'ach', 'Actinidia18718' => 'ach', 'Actinidia19665' => 'ach', 'Actinidia19666' => 'ach', 'Actinidia19667' => 'ach', 'Actinidia25776' => 'ach', 'Actinidia27219' => 'ach', 'Actinidia34065' => 'ach', 'Actinidia35761' => 'ach', 'Ah.01g015930' => 'amhyb', 'Ah.11g047880' => 'amhyb', 'AL1G33990' => 'aly', 'AL4G40630' => 'aly', 'AL5G17170' => 'aly', 'AL5G18660' => 'aly', 'AL8G37790' => 'aly', 'Aqoxy2G02016' => 'aox', 'Aqoxy2G02017' => 'aox', 'Aqoxy2G02810' => 'aox', 'Aqoxy3G02527' => 'aox', 'Aqoxy3G02568' => 'aox', 'Aqoxy3G02854' => 'aox', 'Aqoxy3G02855' => 'aox', 'Aqoxy3G03623' => 'aox', 'Aqoxy4G01605' => 'aox', 'Aqoxy4G02207' => 'aox', 'Aqoxy523s001' => 'aox', 'Aqoxy7G03298' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1JT8J9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GIQ2XV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JY4JA5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L2QDU1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M0YMFT' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.MJ9BA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QJ15ZQ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RS7A87' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.TAYI6X' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UPLP9N' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X9WBFE' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y95S47' => 'arhy', 'AT1G20960' => 'ath', 'AT2G42270' => 'ath', 'AT3G27730' => 'ath', 'AT5G61140' => 'ath', 'ATR0064G009' => 'atr', 'ATR0605G032' => 'atr', 'ATR0716G040' => 'atr', 'ATR0716G079' => 'atr', 'ATR1127G132' => 'atr', 'ATR1127G181' => 'atr', 'ATR1127G209' => 'atr', 'ATR1152G105' => 'atr', 'Atru.chr1.23' => 'acertr', 'Atru.chr1.24' => 'acertr', 'Atru.chr1.25' => 'acertr', 'Atru.chr1.39' => 'acertr', 'Atru.chr13.29' => 'acertr', 'Atru.chr13.30' => 'acertr', 'Atru.chr6.2351' => 'acertr', 'Atru.chr9.419' => 'acertr', 'AUR62008516' => 'cqu', 'AUR62012245' => 'cqu', 'AUR62021574' => 'cqu', 'AUR62022876' => 'cqu', 'AUR62024846' => 'cqu', 'AUR62024847' => 'cqu', 'AUR62028529' => 'cqu', 'AUR62032372' => 'cqu', 'AUR62032373' => 'cqu', 'BcaB02g08987' => 'bca', 'BcaB02g08990' => 'bca', 'BcaB03g11743' => 'bca', 'BcaB03g14290' => 'bca', 'BcaB05g25200' => 'bca', 'BcaB05g25201' => 'bca', 'BcaB07g30146' => 'bca', 'BcaC01g00795' => 'bca', 'BcaC01g05308' => 'bca', 'BcaC03g14318' => 'bca', 'BcaC03g15894' => 'bca', 'BcaC03g15895' => 'bca', 'BcaC03g15896' => 'bca', 'BcaC05g26004' => 'bca', 'BcaC06g34852' => 'bca', 'BcaC09g50652' => 'bca', 'BolC1t05557H' => 'bol', 'BolC2t07803H' => 'bol', 'BolC2t09659H' => 'bol', 'BolC2t11507H' => 'bol', 'BolC2t12187H' => 'bol', 'BolC3t15183H' => 'bol', 'BolC3t20725H' => 'bol', 'BolC5t30664H' => 'bol', 'BolC7t42794H' => 'bol', 'BraA02t06099Z' => 'bra', 'BraA02t08564Z' => 'bra', 'BraA02t09087Z' => 'bra', 'BraA06t24805Z' => 'bra', 'BraA07t29275Z' => 'bra', 'BraA08t33566Z' => 'bra', 'C02p17050' => 'bna', 'C02p36640' => 'bna', 'C02p54450' => 'bna', 'C02p61380' => 'bna', 'C03p28130' => 'bna', 'C03p84360' => 'bna', 'C03p84370' => 'bna', 'C05p19630' => 'bna', 'C07p22580' => 'bna', 'C07p22590' => 'bna', 'C07p22650' => 'bna', 'C07p22660' => 'bna', 'C07p22670' => 'bna', 'CAN.G1095.6' => 'can', 'CAN.G1484.1' => 'can', 'CAN.G1799.14' => 'can', 'CAN.G587.44' => 'can', 'CAN.G587.45' => 'can', 'CAN.G993.32' => 'can', 'CAN.G993.33' => 'can', 'CAN.G993.34' => 'can', 'CAN.G993.35' => 'can', 'CANSAT64G1924' => 'cansat', 'CANSAT78G0159' => 'cansat', 'CANSAT80G0652' => 'cansat', 'CANSAT80G1721' => 'cansat', 'CARHR021420' => 'chi', 'CARHR137320' => 'chi', 'CARHR149190' => 'chi', 'CARHR274830' => 'chi', 'Carub.0001s2043' => 'cru', 'Carub.0004s2461' => 'cru', 'Carub.0005s0628' => 'cru', 'Carub.0008s2181' => 'cru', 'Ca_03699_v3' => 'car', 'Ca_03851_v3' => 'car', 'Ca_13114_v3' => 'car', 'Ca_19992_v3' => 'car', 'Ca_19994_v3' => 'car', 'Ca_19995_v3' => 'car', 'Ca_19996_v3' => 'car', 'Ca_26749_v3' => 'car', 'Ca_28347_v3' => 'car', 'CBR_g38192' => 'cbr', 'CBR_g70690' => 'cbr', 'Cc00_g02560' => 'ccan', 'Cc01_g07720' => 'ccan', 'Cc01_g07730' => 'ccan', 'Cc02_g28440' => 'ccan', 'Cc05_g03360' => 'ccan', 'Cc05_g03370' => 'ccan', 'Cc05_g03380' => 'ccan', 'Cc07_g01890' => 'ccan', 'CDE04G1372' => 'cde', 'CDE06G0248' => 'cde', 'CDE06G0778' => 'cde', 'CDE06G1554' => 'cde', 'CDE06G2318' => 'cde', 'CDE06G2383' => 'cde', 'CDE07G1215' => 'cde', 'CDE07G1660' => 'cde', 'Cfa007396' => 'cfa', 'Cfa014157' => 'cfa', 'Cfa019322' => 'cfa', 'Cfa026662' => 'cfa', 'Ciclev10004124m.g' => 'ccl', 'Ciclev10010890m.g' => 'ccl', 'Ciclev10017496m.g' => 'ccl', 'Ciclev10018483m.g' => 'ccl', 'Ciclev10020262m.g' => 'ccl', 'CiPaw.03G041700' => 'cil', 'CiPaw.07G131100' => 'cil', 'CiPaw.11G052300' => 'cil', 'ClCG00G002130' => 'cla', 'ClCG04G011840' => 'cla', 'ClCG05G006710' => 'cla', 'ClCG05G013070' => 'cla', 'ClCG09G019150' => 'cla', 'ClCG11G018370' => 'cla', 'COL.COLO4_06748' => 'col', 'COL.COLO4_06749' => 'col', 'COL.COLO4_18725' => 'col', 'COL.COLO4_20702' => 'col', 'COL.COLO4_29060' => 'col', 'Cpa.g.sc108.46' => 'cpa', 'Cpa.g.sc108.48' => 'cpa', 'Cpa.g.sc36.108' => 'cpa', 'Cpa.g.sc94.34' => 'cpa', 'Cpa.g.sc94.38' => 'cpa', 'Cpa.g.sc94.39' => 'cpa', 'Cpa.g.sc94.42' => 'cpa', 'Cpa.g.sc94.44' => 'cpa', 'Cre10.g446650' => 'cre', 'Cre17.g744147' => 'cre', 'CsaV3_1G005930' => 'csa', 'CsaV3_3G015340' => 'csa', 'CsaV3_5G027240' => 'csa', 'CSS0001001' => 'camsi', 'CSS0007254' => 'camsi', 'CSS0008681' => 'camsi', 'CSS0010043' => 'camsi', 'CSS0010952' => 'camsi', 'CSS0020846' => 'camsi', 'CSS0029535' => 'camsi', 'CSS0036316' => 'camsi', 'CSS0038722' => 'camsi', 'CSS0043185' => 'camsi', 'DCAR_003081' => 'dca', 'DCAR_011555' => 'dca', 'DCAR_021712' => 'dca', 'DCAR_029050' => 'dca', 'Dinv10292' => 'din', 'Dinv17404' => 'din', 'Dinv28776' => 'din', 'Dinv32321' => 'din', 'Dinv35096' => 'din', 'Duzib128G1905' => 'dzi', 'Duzib147G1237' => 'dzi', 'Duzib205G0140' => 'dzi', 'ECA232G3463' => 'eca', 'ECA232G4622' => 'eca', 'ECA246G0163' => 'eca', 'EL10Ac2g02545' => 'bvu', 'EL10Ac2g04824' => 'bvu', 'EL10Ac5g11118' => 'bvu', 'Eucgr.B00583' => 'egr', 'Eucgr.F01825' => 'egr', 'Eucgr.J02227' => 'egr', 'FAN04G0244' => 'fan', 'FAN04G1071' => 'fan', 'FAN04G2609' => 'fan', 'FAN05G2437' => 'fan', 'FAN05G3587' => 'fan', 'FAN05G3590' => 'fan', 'FAN05G4579' => 'fan', 'FAN08G2399' => 'fan', 'FAN08G2720' => 'fan', 'FAN09G1765' => 'fan', 'FAN09G2563' => 'fan', 'FAN09G2855' => 'fan', 'FAN09G4875' => 'fan', 'FAN13G0991' => 'fan', 'FAN13G1554' => 'fan', 'FAN13G2240' => 'fan', 'FAN14G0455' => 'fan', 'FAN14G2632' => 'fan', 'FAN14G3354' => 'fan', 'FAN18G1430' => 'fan', 'FAN18G2116' => 'fan', 'FAN18G3232' => 'fan', 'FvH4_5g13990' => 'fve', 'FvH4_5g21940' => 'fve', 'FvH4_5g30070' => 'fve', 'FvH4_6g00860' => 'fve', 'FvH4_6g47191' => 'fve', 'FvH4_6g47200' => 'fve', 'FvH4_6g51100' => 'fve', 'Glyma.06G202500' => 'gma', 'Glyma.08G173500' => 'gma', 'Glyma.15G253800' => 'gma', 'Glyma.16G072300' => 'gma', 'Gohir.A05G357600' => 'ghi', 'Gohir.A10G187300' => 'ghi', 'Gohir.A12G182100' => 'ghi', 'Gohir.D04G056500' => 'ghi', 'Gohir.D10G194400' => 'ghi', 'Gohir.D12G185001' => 'ghi', 'Gorai.008G198400' => 'gra', 'Gorai.011G217300' => 'gra', 'Gorai.012G063400' => 'gra', 'GSVIVG01007875001' => 'vvi', 'GSVIVG01010769001' => 'vvi', 'GSVIVG01032433001' => 'vvi', 'HanXRQChr04g0098041' => 'han', 'HanXRQChr05g0157291' => 'han', 'HanXRQChr06g0165821' => 'han', 'HanXRQChr09g0255061' => 'han', 'HanXRQChr11g0333861' => 'han', 'HanXRQChr12g0359471' => 'han', 'HanXRQChr17g0533721' => 'han', 'Haze_07712' => 'cav', 'Haze_14707' => 'cav', 'Haze_17095' => 'cav', 'Haze_22879' => 'cav', 'Haze_26493' => 'cav', 'Haze_26748' => 'cav', 'Haze_26826' => 'cav', 'Hma1.2p1_0018F.1_g012850' => 'hma', 'Hma1.2p1_0060F.1_g033190' => 'hma', 'Hma1.2p1_0099F.1_g048765' => 'hma', 'Hma1.2p1_0099F.1_g048770' => 'hma', 'Hma1.2p1_0155F.1_g068450' => 'hma', 'Hma1.2p1_0640F.1_g194110' => 'hma', 'Hma1.2p1_0914F.1_g236150' => 'hma', 'Hma1.2p1_1184F.1_g264863' => 'hma', 'HPP92_001298' => 'vpl', 'HPP92_009485' => 'vpl', 'HPP92_009486' => 'vpl', 'HPP92_009545' => 'vpl', 'HPP92_014730' => 'vpl', 'HPP92_014731' => 'vpl', 'HPP92_014732' => 'vpl', 'HPP92_014733' => 'vpl', 'Hund05759' => 'sun', 'Hund09903' => 'sun', 'Hund09904' => 'sun', 'Hund13858' => 'sun', 'Hund13859' => 'sun', 'Hund13860' => 'sun', 'Hund27624' => 'sun', 'Lalb_Chr10g0093721' => 'lal', 'Lalb_Chr10g0093731' => 'lal', 'Lalb_Chr14g0362841' => 'lal', 'Lalb_Chr25g0285181' => 'lal', 'Lj1g0003461' => 'lja', 'Lj1g0013932' => 'lja', 'Lj2A162G38' => 'lonja', 'Lj2A162T42' => 'lonja', 'Lj2C162G1' => 'lonja', 'Lj2C162T9' => 'lonja', 'Lj3g0017691' => 'lja', 'Lj5A314T76' => 'lonja', 'Lj5C103G8' => 'lonja', 'Lj5C314G2' => 'lonja', 'Lj5g0027611' => 'lja', 'Lj7A316G9' => 'lonja', 'Lj7C596T1' => 'lonja', 'Lsat_1_v5_gn_0_41240' => 'lsa', 'Lsat_1_v5_gn_0_41260' => 'lsa', 'Lsat_1_v5_gn_3_7441' => 'lsa', 'Lsat_1_v5_gn_3_7501' => 'lsa', 'Lsat_1_v5_gn_4_157361' => 'lsa', 'Lsat_1_v5_gn_4_183620' => 'lsa', 'Lsat_1_v5_gn_4_98860' => 'lsa', 'Lsat_1_v5_gn_5_22540' => 'lsa', 'Lsat_1_v5_gn_8_141500' => 'lsa', 'Lsat_1_v5_gn_9_22700' => 'lsa', 'Manes.06G085400' => 'mes', 'Manes.17G114600' => 'mes', 'Manes.18G000900' => 'mes', 'Manes.18G005100' => 'mes', 'Mapoly0013s0041' => 'mpo', 'Mapoly0043s0081' => 'mpo', 'Mapoly0046s0099' => 'mpo', 'MBI01_g21759_MAGBIO' => 'mbi', 'MBI03_g40527_MAGBIO' => 'mbi', 'MBI15_g10870_MAGBIO' => 'mbi', 'MBI15_g36602_MAGBIO' => 'mbi', 'MBI16_g05479_MAGBIO' => 'mbi', 'MBI16_g05786_MAGBIO' => 'mbi', 'MBI16_g29103_MAGBIO' => 'mbi', 'MBI18_g28840_MAGBIO' => 'mbi', 'MBI18_g37603_MAGBIO' => 'mbi', 'MCO02G020' => 'mco', 'MCO09G431' => 'mco', 'MCO14G361' => 'mco', 'MD04G1240400' => 'mdo', 'MD06G1201900' => 'mdo', 'MD09G1029000' => 'mdo', 'MD09G1029100' => 'mdo', 'MD09G1062900' => 'mdo', 'MD09G1063000' => 'mdo', 'MD12G1257300' => 'mdo', 'Medtr2g030875' => 'mtr', 'Medtr2g030905' => 'mtr', 'Medtr2g031250' => 'mtr', 'Medtr2g064390' => 'mtr', 'Medtr2g064740' => 'mtr', 'Medtr2g064810' => 'mtr', 'Medtr3g025300' => 'mtr', 'Medtr4g008770' => 'mtr', 'Medtr4g008780' => 'mtr', 'Medtr4g011450' => 'mtr', 'Medtr7g075463' => 'mtr', 'Medtr8g096460' => 'mtr', 'MELO3C000166.2' => 'cme', 'MELO3C000934.2' => 'cme', 'MELO3C002023.2' => 'cme', 'MELO3C006732.2' => 'cme', 'MELO3C021565.2' => 'cme', 'MELO3C027092.2' => 'cme', 'MELO3C027093.2' => 'cme', 'MELO3C027094.2' => 'cme', 'MELO3C028927.2' => 'cme', 'Migut.C00343' => 'egut', 'Migut.D01699' => 'egut', 'Migut.G01248' => 'egut', 'Migut.L01012' => 'egut', 'Migut.N01909' => 'egut', 'MSTRG.1010' => 'ama', 'MSTRG.4451' => 'ama', 'Nitab4.5_0000110g0580' => 'nta', 'Nitab4.5_0000110g0610' => 'nta', 'Nitab4.5_0000155g0210' => 'nta', 'Nitab4.5_0000520g0010' => 'nta', 'Nitab4.5_0000520g0020' => 'nta', 'Nitab4.5_0000831g0040' => 'nta', 'Nitab4.5_0001328g0010' => 'nta', 'Nitab4.5_0001328g0020' => 'nta', 'Nitab4.5_0001515g0080' => 'nta', 'Nitab4.5_0001515g0090' => 'nta', 'Nitab4.5_0001618g0100' => 'nta', 'Nitab4.5_0001688g0120' => 'nta', 'Nitab4.5_0002503g0090' => 'nta', 'Nitab4.5_0002682g0030' => 'nta', 'Nitab4.5_0003582g0070' => 'nta', 'Nitab4.5_0003811g0010' => 'nta', 'Nitab4.5_0003918g0040' => 'nta', 'Nitab4.5_0003918g0050' => 'nta', 'Nitab4.5_0004689g0010' => 'nta', 'Nitab4.5_0004801g0020' => 'nta', 'Nitab4.5_0004954g0020' => 'nta', 'Nitab4.5_0004994g0070' => 'nta', 'Nitab4.5_0005694g0030' => 'nta', 'Nitab4.5_0007467g0010' => 'nta', 'Nitab4.5_0008569g0010' => 'nta', 'Nitab4.5_0009078g0030' => 'nta', 'Nitab4.5_0009150g0030' => 'nta', 'Nitab4.5_0009811g0020' => 'nta', 'Nitab4.5_0018373g0010' => 'nta', 'Nitab4.5_0022308g0010' => 'nta', 'Nitab4.5_0026257g0010' => 'nta', 'Nn3g16790' => 'nnu', 'Nn4g23415' => 'nnu', 'Nn4g23416' => 'nnu', 'Nn4g24979' => 'nnu', 'Nn6g31594' => 'nnu', 'Oeu015891.1' => 'oeu', 'Oeu031662.3' => 'oeu', 'Oeu033004.1' => 'oeu', 'Oeu052476.1' => 'oeu', 'Oeu057052.1' => 'oeu', 'Oeu060274.1' => 'oeu', 'Os02g0106966' => 'osa', 'Os02g0107000' => 'osa', 'Os02g0108700' => 'osa', 'Os02g0617500' => 'osa', 'Os03g0213400' => 'osa', 'Os03g0218100' => 'osa', 'Os03g0743800' => 'osa', 'Peaxi162Scf00013g00069' => 'pax', 'Peaxi162Scf00064g01426' => 'pax', 'Peaxi162Scf00129g00137' => 'pax', 'Peaxi162Scf00304g00136' => 'pax', 'PGR083G0994' => 'pgr', 'PGR083G1659' => 'pgr', 'PGSC0003DMG400030366' => 'stu', 'PGSC0003DMG400030367' => 'stu', 'PGSC0003DMG401000479' => 'stu', 'PGSC0003DMG402000479' => 'stu', 'PGSC0003DMG402026992' => 'stu', 'Phvul.005G055300' => 'pvu', 'Phvul.008G156500' => 'pvu', 'Phvul.009G192100' => 'pvu', 'Potri.001G348200' => 'ptr', 'Potri.002G002600' => 'ptr', 'Potri.012G097300' => 'ptr', 'Potri.015G056501' => 'ptr', 'Potri.015G095500' => 'ptr', 'Pp3c1_35880' => 'ppa', 'Pp3c2_9850' => 'ppa', 'Pp3c5_3790' => 'ppa', 'PRCOL_00000726' => 'pco', 'PRCOL_00003257' => 'pco', 'PRCOL_00003356' => 'pco', 'Prupe.1G356600' => 'ppe', 'Prupe.3G033700' => 'ppe', 'Prupe.3G238700' => 'ppe', 'Prupe.3G288900' => 'ppe', 'Prupe.4G035000' => 'ppe', 'Prupe.6G357800' => 'ppe', 'Prupe.6G358100' => 'ppe', 'Prupe.7G141800' => 'ppe', 'Prupe.7G240300' => 'ppe', 'Psat1g002360' => 'psa', 'Psat1g071800' => 'psa', 'Psat2g149120' => 'psa', 'Psat3g114520' => 'psa', 'Psat5g188320' => 'psa', 'Psat7g254480' => 'psa', 'Psat7g254520' => 'psa', 'PSO017G0961' => 'pso', 'PSO063G1343' => 'pso', 'PSO063G7524' => 'pso', 'PSO210G1684' => 'pso', 'PSO210G7467' => 'pso', 'PSO478G0555' => 'pso', 'PSO782G5199' => 'pso', 'PSO832G0354' => 'pso', 'QL02p075347' => 'qlo', 'QL04p003238' => 'qlo', 'QL10p013523' => 'qlo', 'QL10p013857' => 'qlo', 'QL10p019292' => 'qlo', 'RcHm_v2.0_Chr1g0335081' => 'rch', 'RcHm_v2.0_Chr2g0089321' => 'rch', 'RcHm_v2.0_Chr2g0166221' => 'rch', 'RcHm_v2.0_Chr2g0172661' => 'rch', 'RcHm_v2.0_Chr2g0172671' => 'rch', 'RcHm_v2.0_Chr3g0448021' => 'rch', 'RcHm_v2.0_Chr3g0448041' => 'rch', 'RcHm_v2.0_Chr3g0448351' => 'rch', 'RcHm_v2.0_Chr5g0014801' => 'rch', 'RcHm_v2.0_Chr7g0182981' => 'rch', 'RcHm_v2.0_Chr7g0209461' => 'rch', 'RcHm_v2.0_Chr7g0224331' => 'rch', 'Rhsim06G0001600' => 'rsi', 'Rhsim08G0052100' => 'rsi', 'Rhsim08G0146700' => 'rsi', 'Sabra15G0081700' => 'sbr', 'Sabra15G0116500' => 'sbr', 'Sabra16G0227800' => 'sbr', 'SalBow7G1805' => 'sbo', 'SalBow8G2728' => 'sbo', 'Sc03g0008290' => 'sci', 'Sc15g0004020' => 'sci', 'Sc16g0003250' => 'sci', 'Sc16g0003270' => 'sci', 'Sc16g0003280' => 'sci', 'Sed0004818' => 'sed', 'Sed0023477' => 'sed', 'Sed0024864' => 'sed', 'SEGI_01233' => 'sgi', 'SEGI_03458' => 'sgi', 'SEGI_15111' => 'sgi', 'SEGI_17738' => 'sgi', 'SEGI_24110' => 'sgi', 'SEGI_27489' => 'sgi', 'SEGI_29585' => 'sgi', 'SEGI_30229' => 'sgi', 'SEGI_31070' => 'sgi', 'SEGI_31976' => 'sgi', 'SEGI_33058' => 'sgi', 'SEGI_38691' => 'sgi', 'SEGI_41017' => 'sgi', 'SGA_v2.0_scaffold161G37860' => 'sas', 'SGA_v2.0_scaffold38G15026' => 'sas', 'SGA_v2.0_scaffold7G04039' => 'sas', 'SGA_v2.0_scaffold86G26868' => 'sas', 'SGA_v2.0_scaffold86G26869' => 'sas', 'SGA_v2.0_scaffold86G26871' => 'sas', 'SGA_v2.0_scaffold86G26884' => 'sas', 'SHI06700' => 'shi', 'SHI06701' => 'shi', 'SHI31129' => 'shi', 'SMO116G0141' => 'smo', 'SMO116G0367' => 'smo', 'SMO134G0006' => 'smo', 'SMO195G0012' => 'smo', 'SMO195G0053' => 'smo', 'SMO347G0607' => 'smo', 'Solyc02g086580.4' => 'sly', 'Solyc06g065300.4' => 'sly', 'Solyc06g069480.3' => 'sly', 'Solyc06g071620.3' => 'sly', 'Solyc06g082100.4' => 'sly', 'Solyc06g082110.1' => 'sly', 'Sopen02g031320' => 'spe', 'Sopen02g031330' => 'spe', 'Sopen06g026770' => 'spe', 'Sopen06g027930' => 'spe', 'Sopen06g033490' => 'spe', 'Sopen06g033500' => 'spe', 'Sp1g18660' => 'spa', 'Sp2g16840' => 'spa', 'Sp2g24390' => 'spa', 'TAR369G0023' => 'tar', 'TAR369G0044' => 'tar', 'TAR369G0929' => 'tar', 'TAR371G0592' => 'tar', 'TAR371G1183' => 'tar', 'TAR381G1514' => 'tar', 'TAR622G0150' => 'tar', 'TAR624G1422' => 'tar', 'THA.LOC104805379' => 'tha', 'THA.LOC104812019' => 'tha', 'THA.LOC104818343' => 'tha', 'Thecc.03G100600' => 'tca', 'Thecc.04G014600' => 'tca', 'Thecc.10G149400' => 'tca', 'Thhalv10003505m.g' => 'esa', 'Thhalv10003551m.g' => 'esa', 'Thhalv10006525m.g' => 'esa', 'Thhalv10016123m.g' => 'esa', 'TPR.G10336' => 'tpr', 'TPR.G10348' => 'tpr', 'TPR.G12162' => 'tpr', 'TPR.G22493' => 'tpr', 'TPR.G24577' => 'tpr', 'TPR.G25887' => 'tpr', 'TPR.G26936' => 'tpr', 'TPR.G26947' => 'tpr', 'TPR.G27592' => 'tpr', 'TPR.G29286' => 'tpr', 'TPR.G31014' => 'tpr', 'TPR.G38666' => 'tpr', 'TPR.G40249' => 'tpr', 'TPR.G919' => 'tpr', 'TWI14G0143' => 'twi', 'TWI36G0693' => 'twi', 'TWI36G1166' => 'twi', 'TWI36G1299' => 'twi', 'TWI60G0107' => 'twi', 'unitig_26.g9847' => 'ugi', 'unitig_749.g14004' => 'ugi', 'vmacro00110' => 'vma', 'vmacro11436' => 'vma', 'vmacro14714' => 'vma', 'vmacro17602' => 'vma', 'vmacro17603' => 'vma', 'vmacro18268' => 'vma', 'vmacro18269' => 'vma', 'vmacro21549' => 'vma', 'VMungo1080G0748' => 'vmu', 'VMungo1309G0215' => 'vmu', 'VMungo1309G1347' => 'vmu', 'VMungo1309G1505' => 'vmu', 'VMungo1309G1851' => 'vmu', 'VMungo1383G1882' => 'vmu', 'Zm00001eb184840' => 'zma', 'Zm00001eb328850' => 'zma', 'Zm00001eb400270' => 'zma' ) $gf_id = 'HOM05D000924' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000924' ) $data_identifier = 'HOM05D000924' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 22, 'aar' => (int) 4, 'aag' => (int) 4, 'ach' => (int) 21, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 12, 'arhy' => (int) 12, 'ath' => (int) 4, 'atr' => (int) 8, 'acertr' => (int) 8, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 9, 'bra' => (int) 6, 'can' => (int) 9, 'cansat' => (int) 4, 'chi' => (int) 4, 'cru' => (int) 4, 'car' => (int) 9, 'cbr' => (int) 2, 'ccan' => (int) 8, 'cde' => (int) 8, 'cfa' => (int) 4, 'ccl' => (int) 5, 'cil' => (int) 3, 'cla' => (int) 6, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 3, 'camsi' => (int) 10, 'dca' => (int) 4, 'din' => (int) 5, 'dzi' => (int) 3, 'eca' => (int) 3, 'bvu' => (int) 3, 'egr' => (int) 3, 'fan' => (int) 22, 'fve' => (int) 7, 'gma' => (int) 4, 'ghi' => (int) 6, 'gra' => (int) 3, 'vvi' => (int) 3, 'han' => (int) 7, 'cav' => (int) 7, 'hma' => (int) 8, 'vpl' => (int) 8, 'sun' => (int) 7, 'lal' => (int) 4, 'lja' => (int) 4, 'lonja' => (int) 9, 'lsa' => (int) 10, 'mes' => (int) 4, 'mpo' => (int) 3, 'mbi' => (int) 9, 'mco' => (int) 3, 'mdo' => (int) 7, 'mtr' => (int) 12, 'cme' => (int) 9, 'egut' => (int) 5, 'ama' => (int) 2, 'nta' => (int) 31, 'nnu' => (int) 5, 'oeu' => (int) 6, 'osa' => (int) 7, 'pax' => (int) 4, 'pgr' => (int) 2, 'stu' => (int) 5, 'pvu' => (int) 3, 'ptr' => (int) 5, 'ppa' => (int) 3, 'pco' => (int) 3, 'ppe' => (int) 9, 'psa' => (int) 7, 'pso' => (int) 8, 'qlo' => (int) 5, 'rch' => (int) 12, 'rsi' => (int) 3, 'sbr' => (int) 3, 'sbo' => (int) 2, 'sci' => (int) 5, 'sed' => (int) 3, 'sgi' => (int) 13, 'sas' => (int) 7, 'shi' => (int) 3, 'smo' => (int) 6, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 3, 'tar' => (int) 8, 'tha' => (int) 3, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 14, 'twi' => (int) 5, 'ugi' => (int) 2, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 3 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb400270' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1